Journal: Cancer Cell International

Article Title: Prostate cancer in omics era

doi: 10.1186/s12935-022-02691-y

Figure Lengend Snippet: several of the ground-breaking PCa multi-omics research

Article Snippet: ICGC [ ] , Projects, including ICGC, TCGA, Johns Hopkins University, and the Tumor Sequencing Project, covering somatic mutations, CNV, structural rearrangements, gene expression, microRNAs, and DNA methylation data , Uses a web-based graphical user interface to provide researchers with a variety of options for searching and analyzing data, and to help them create complex searches across multiple data sets , http://dcc.icgc.org.

Techniques: Biomarker Discovery, Microarray, Next-Generation Sequencing, Functional Assay, Gene Expression, Sequencing, DNA Methylation Assay, Quantitative Proteomics, Mutagenesis, Genome Wide, Drug discovery, Clinical Proteomics

Journal: Genes & Diseases

Article Title: Recent advances in elucidating the genetics of common variable immunodeficiency

doi: 10.1016/j.gendis.2019.10.002

Figure Lengend Snippet: Advantages and limitations of different genomic, transcriptomic and proteomics based platforms in Common variable immunodeficiency disease. ELISA, Enzyme-linked immunosorbent assay; SNP, Single nucleotide polymorphism.

Article Snippet: The major breakthrough in the sequencing technology, came with 13-years long, Human Genome Project (HGP) which was completed in 2003. , With the transition of sequencing technology to development of next generation sequencing based technology (Illumina, Roche 454, Ion Torrent/PGM sequencing, Oxford Nanopore) for rapid amplification of larger stretch of human genome, the sequencing platforms allowed for sequencing with 30× coverage or more.

Techniques: Enzyme-linked Immunosorbent Assay, Genome Wide, Biomarker Discovery, Sequencing, Electrophoresis, Next-Generation Sequencing, Amplification, High Throughput Screening Assay, Gene Expression, Generated, Microarray, Hybridization, Sample Prep, Transcriptome Wide Gene Expression, DNA Methylation Assay, Methylation, Quantitative Proteomics, Fourier Transform Infrared Spectroscopy, Spectroscopy

Journal: Journal of Big Data

Article Title: The evolution of Big Data in neuroscience and neurology

doi: 10.1186/s40537-023-00751-2

Figure Lengend Snippet: Sample of Neurology and Neuroscience Databases (see additional information in Additional file 1 : Table S2 for the above databases)

Article Snippet: NIH roadmap epigenomics mapping consortium https://egg2.wustl.edu/roadmap/web_portal/ , Data from 127 different tissues and both adult and embryonic cell types , "High-quality, genome-wide maps of several key histone modifications, chromatin accessibility, DNA methylation and mRNA expression" , F , , C , P&C.

Techniques: Imaging, Positron Emission Tomography-Computed Tomography, Single Photon Emission Computed Tomography, Injection, Functional Assay, Software, Biomarker Discovery, Staining, Immunostaining, Activity Assay, Gene Expression, Slice Preparation, Microarray, Sequencing, Expressing, Clinical Proteomics, Electron Microscopy, Microscopy, Tomography, Diffusion-based Assay, Produced, Magnetic Resonance Imaging, Genome Wide, DNA Methylation Assay, Mass Spectrometry, Patch Clamp, Histopathology, In Vivo, Mutagenesis

Journal: Journal of Big Data

Article Title: The evolution of Big Data in neuroscience and neurology

doi: 10.1186/s40537-023-00751-2

Figure Lengend Snippet: Sample of Neurology and Neuroscience Databases (see additional information in Additional file 1 : Table S2 for the above databases)

Article Snippet: INCF knowledgespace: https://knowledge-space.org/ , Unknown , Anatomy, expression, models, morphology, physiology, links to data sets , F , + , O , P&C.

Techniques: Imaging, Positron Emission Tomography-Computed Tomography, Single Photon Emission Computed Tomography, Injection, Functional Assay, Software, Biomarker Discovery, Staining, Immunostaining, Activity Assay, Gene Expression, Slice Preparation, Microarray, Sequencing, Expressing, Clinical Proteomics, Electron Microscopy, Microscopy, Tomography, Diffusion-based Assay, Produced, Magnetic Resonance Imaging, Genome Wide, DNA Methylation Assay, Mass Spectrometry, Patch Clamp, Histopathology, In Vivo, Mutagenesis